Southeast San Rafael Hotels near San Rafael

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Dec 29 - Dec 30
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Dec 30 - Dec 31
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Jan 2 - Jan 4
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Jan 9 - Jan 11

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Our top choices for Southeast San Rafael hotels

Pool
Extended Stay America Suites San Rafael Francisco Blvd East

Extended Stay America Suites San Rafael Francisco Blvd East

Extended Stay America Suites San Rafael Francisco Blvd East
2.5 star property
Southeast San Rafael
6.8 out of 10, (1002)
"The room was clean! And the service was great!"
United States
Ana Lorena
The price is P6,503
P7,296 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Extended Stay America Suites San Rafael Francisco Blvd East
Lobby sitting area
Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
17.8 km from Southeast San Rafael
9.0 out of 10, Wonderful, (7252)
"Great place to stay!"
United States
Isaiah
The price is P5,855
P9,312 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Hotel Riu Plaza Fisherman's Wharf
Free daily buffet breakfast
Holiday Inn Express and Suites Fisherman's Wharf by IHG

Holiday Inn Express and Suites Fisherman's Wharf by IHG

Holiday Inn Express and Suites Fisherman's Wharf by IHG
3.0 star property
17.8 km from Southeast San Rafael
9.2 out of 10, Wonderful, (2241)
"Awesome place to stay"
United States
Mark Anthony
The price is P6,991
P9,990 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Holiday Inn Express and Suites Fisherman's Wharf by IHG
Egyptian cotton sheets, premium bedding, down comforters, pillowtop beds
Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
17.7 km from Southeast San Rafael
9.0 out of 10, Wonderful, (3837)
"Excellent stay and great location! "
United States
CHRISTINE
The price is P7,440
P11,453 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Hotel Caza Fisherman's Wharf
Exterior
Handlery Union Square Hotel

Handlery Union Square Hotel

Handlery Union Square Hotel
3.5 star property
20 km from Southeast San Rafael
8.8 out of 10, Excellent, (2798)
"Clean hotel, great location, kind staff! "
United States
Felix
The price is P61,640
P72,548 total
includes taxes & fees
Jan 11 - Jan 12, 2026
Handlery Union Square Hotel
Terrace/patio
Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco
4.0 star property
19.5 km from Southeast San Rafael
8.8 out of 10, Excellent, (2835)
"Clean room, friendly staff and good location"
United States
Jose Eduardo
The price is P5,945
P6,997 total
includes taxes & fees
Jan 3 - Jan 4, 2026
Club Quarters Hotel in San Francisco
Exterior
The Mosser

The Mosser

The Mosser
3.0 star property
20.4 km from Southeast San Rafael
8.0 out of 10, Very Good, (1004)
"room was perfect, the bed so comfy, the bedroom had a full bath which is hard to find in sf and for the price was good, also perfect location, personnel was kind i will come back "
Mexico
Miguel
The price is P4,112
P4,832 total
includes taxes & fees
Jan 3 - Jan 4, 2026
The Mosser
Front of property - evening/night
Hilton San Francisco Financial District

Hilton San Francisco Financial District

Hilton San Francisco Financial District
4.0 star property
19.3 km from Southeast San Rafael
8.8 out of 10, Excellent, (2204)
"Great hotel "
United States
Tanya
The price is P6,214
P7,314 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Hilton San Francisco Financial District
Outdoor pool, open 9:00 AM to 7:00 PM, sun loungers
Holiday Inn Golden Gateway by IHG

Holiday Inn Golden Gateway by IHG

Holiday Inn Golden Gateway by IHG
3.5 star property
19.3 km from Southeast San Rafael
9.0 out of 10, Wonderful, (5056)
"Nice stay. Hotel was clean, quiet and accessible. "
United States
Brandon
The price is P6,580
P7,744 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Holiday Inn Golden Gateway by IHG
Lobby
Marriott Vacation Club®, San Francisco

Marriott Vacation Club®, San Francisco

Marriott Vacation Club®, San Francisco
3.0 star property
17.8 km from Southeast San Rafael
9.2 out of 10, Wonderful, (1118)
"Great hotel"
United States
Michelle
The price is P7,931
P9,334 total
includes taxes & fees
Jan 23 - Jan 24, 2026
Marriott Vacation Club®, San Francisco
Game room
Hotel Zephyr San Francisco

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
17.8 km from Southeast San Rafael
8.6 out of 10, Excellent, (2341)
"Great location"
United States
Deborah
The price is P7,379
P10,759 total
includes taxes & fees
Jan 27 - Jan 28, 2026
Hotel Zephyr San Francisco
Exterior
DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
18.6 km from Southeast San Rafael
8.2 out of 10, Very Good, (4047)
"Clean rooms, great breakfast options & friendly staff"
United States
Beth
The price is P6,979
P8,040 total
includes taxes & fees
Jan 18 - Jan 19, 2026
DoubleTree by Hilton Hotel Berkeley Marina
Lobby sitting area
Chancellor Hotel on Union Square

Chancellor Hotel on Union Square

Chancellor Hotel on Union Square
3.5 star property
19.8 km from Southeast San Rafael
9.4 out of 10, Exceptional, (3117)
"Clean room, helpful staff and great location to explore de city."
United States
Alan
The price is P4,449
P5,258 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Chancellor Hotel on Union Square
Interior
Hotel Shattuck Plaza

Hotel Shattuck Plaza

Hotel Shattuck Plaza
4.0 star property
22.1 km from Southeast San Rafael
8.8 out of 10, Excellent, (1095)
"Wonderful, will stay here again."
United States
Jennifer
Hotel Shattuck Plaza
Terrace/patio
Sonesta Emeryville - San Francisco Bay Bridge

Sonesta Emeryville - San Francisco Bay Bridge

Sonesta Emeryville - San Francisco Bay Bridge
3.0 star property
22.2 km from Southeast San Rafael
8.6 out of 10, Excellent, (1305)
"Convenient location, friendly staff"
United States
Diane
The price is P6,521
P7,975 total
includes taxes & fees
Jan 9 - Jan 10, 2026
Sonesta Emeryville - San Francisco Bay Bridge
Terrace/patio
Hyatt Place Emeryville/San Francisco Bay Area

Hyatt Place Emeryville/San Francisco Bay Area

Hyatt Place Emeryville/San Francisco Bay Area
3.0 star property
22.1 km from Southeast San Rafael
8.8 out of 10, Excellent, (1004)
"The entire stay was fabulous…room, breakfast, friendliness of staff, comfort and quiet!"
United States
Carol
The price is P8,460
P9,491 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Hyatt Place Emeryville/San Francisco Bay Area
Lobby
Hotel North Beach

Hotel North Beach

Hotel North Beach
2.0 star property
19.2 km from Southeast San Rafael
7.2 out of 10, Good, (1007)
"A splendid place."
United States
Zachary
Hotel North Beach
Exterior
HYATT house Emeryville/San Francisco Bay Area

HYATT house Emeryville/San Francisco Bay Area

HYATT house Emeryville/San Francisco Bay Area
3.0 star property
21.9 km from Southeast San Rafael
9.2 out of 10, Wonderful, (1192)
"We had a relaxing stay at the Hyatt House. We enjoy the friendly staff and location."
United States
Darius
The price is P8,460
P9,491 total
includes taxes & fees
Jan 5 - Jan 6, 2026
HYATT house Emeryville/San Francisco Bay Area
Terrace/patio
Hilton Garden Inn San Francisco/Oakland Bay Bridge

Hilton Garden Inn San Francisco/Oakland Bay Bridge

Hilton Garden Inn San Francisco/Oakland Bay Bridge
3.0 star property
21.6 km from Southeast San Rafael
8.8 out of 10, Excellent, (1166)
"Great staff and services provided."
United States
Charles
The price is P6,630
P7,438 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Hilton Garden Inn San Francisco/Oakland Bay Bridge
Hypo-allergenic bedding, in-room safe, laptop workspace
YOTEL San Francisco

YOTEL San Francisco

YOTEL San Francisco
3.0 star property
20.6 km from Southeast San Rafael
8.2 out of 10, Very Good, (1001)
"My room was clean, the staff is great and the amenities are great as well "
United States
Edwin
The price is P4,444
P7,651 total
includes taxes & fees
Jan 4 - Jan 5, 2026
YOTEL San Francisco
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Where to stay in Southeast San Rafael

Find the best Southeast San Rafael areas and neighborhoods for the activities you enjoy most.
Mission San Rafael Arcangel showing a church or cathedral, heritage architecture and religious aspects

Downtown San Rafael

While visiting Downtown San Rafael, you might make a stop by sights like Mission San Rafael Arcangel and San Rafael Pacifics Albert Park.

Terra Linda

While there might not be top attractions in Terra Linda, you can explore the larger area and discover places like Marin County Civic Center and Marin County Civic Center Farmers' Market.

Lucas Valley-Marinwood

Lucas Valley-Marinwood might not have many top sights, but Marin County Civic Center and Marin County Civic Center Farmers' Market are two attractions nearby that you can check out.

Gerstle Park

While Gerstle Park might not have many sights to explore, venturing just a little farther will lead you to top things to see and do like Mission San Rafael Arcangel and San Rafael Pacifics Albert Park.

Dominican

While there might not be top attractions in Dominican, you can explore the larger area and discover places like Mission San Rafael Arcangel and Marin County Civic Center Farmers' Market.

Top Southeast San Rafael Hotel Reviews

Kimpton Alton Fisherman's Wharf by IHG

Kimpton Alton Fisherman's Wharf by IHG

10/10 Excellent
"Customer service was awesome. Great location, supior staff, and wonderful room."
Aaron 2-night trip
Posted 18 hours ago
Kimpton Alton Fisherman's Wharf by IHG

Frequently asked questions

What's it like in Southeast San Rafael?
You'll be sure to have fun visiting San Rafael's Southeast San Rafael neighborhood. Looking for sights you might find in a travel guide about Southeast San Rafael? Consider a visit to San Francisco Bay while you're in the neighborhood.
Where is the best place to stay in Southeast San Rafael?
Based on Expedia customer reviews, Extended Stay America Suites San Rafael Francisco Blvd East is the highest ranked property in Southeast San Rafael. This hotel offers free breakfast and in-room kitchens.
If I need to cancel my hotel reservation in Southeast San Rafael, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of your arrival date. If you booked a non-refundable reservation, you might be able to still cancel and receive a refund within a 24-hour period of your booking. Add dates, click "Search", then you can filter by "fully refundable" to get the best options available in Southeast San Rafael.
What is there to do around this San Rafael neighborhood?
Popular attractions in Southeast San Rafael include San Francisco Bay. While you're out sightseeing, Marin Country Mart and Larkspur Ferry Terminal are a couple of additional sights to visit in San Rafael.