A harbor with multiple sailboats and a bridge in the background.

Harbor Island Hotels near San Diego

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Our top choices for Harbor Island hotels

1. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.4 out of 10, Very Good, (3,541 reviews)
"Great location and shuttle service to and from the airport."
Canada
Malinda
The price is P10,361
P15,011 total
includes taxes & fees
Jul 1 - Jul 2
Sheraton San Diego Resort

2. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,194 reviews)
"Loved our stay it had beautiful views and easy accessibility"
United States
Crystal
The price is P10,115
P11,627 total
includes taxes & fees
Jul 19 - Jul 20
Hilton San Diego Airport/Harbor Island

3. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4.4 km from Harbor Island
8.4 out of 10, Very Good, (1,009 reviews)
"great stay"
United States
David
The price is P8,093
P9,323 total
includes taxes & fees
Jul 2 - Jul 3
Crowne Plaza San Diego - Mission Valley by IHG

4. Lafayette Hotel & Club

Lafayette Hotel & Club
4.0 star property
7 km from Harbor Island
9.4 out of 10, Exceptional, (1,755 reviews)
"Beautiful hotel"
United States
Cuauhtemoc
The price is P15,879
P18,252 total
includes taxes & fees
Jun 30 - Jul 1
Lafayette Hotel & Club

5. La Jolla Shores Hotel

La Jolla Shores Hotel
3.0 star property
15.2 km from Harbor Island
8.8 out of 10, Excellent, (1,333 reviews)
"Nice beach view, helpful staff, clean property."
United States
Edgardo
The price is P17,608
P23,775 total
includes taxes & fees
Jun 30 - Jul 1
La Jolla Shores Hotel

6. Valli Hi Motel

Valli Hi Motel
2.5 star property
23.2 km from Harbor Island
8.4 out of 10, Very Good, (1,023 reviews)
"Great place to stay."
United States
Allan
The price is P5,518
P6,288 total
includes taxes & fees
Jul 5 - Jul 6
Valli Hi Motel

7. La Quinta Inn by Wyndham San Diego - Miramar

La Quinta Inn by Wyndham San Diego - Miramar
3.0 star property
26.7 km from Harbor Island
8.0 out of 10, Very Good, (1,335 reviews)
"Clean rooms, helpful staff and great breakfast."
United States
isabel
The price is P8,026
P9,225 total
includes taxes & fees
Jul 1 - Jul 2
La Quinta Inn by Wyndham San Diego - Miramar

8. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very Good, (6,245 reviews)
"Great place to stay if visiting san diego recommend"
United States
Carlos
The price is P9,877
P13,585 total
includes taxes & fees
Jun 29 - Jun 30
Wyndham San Diego Bayside

9. Holiday Inn Express Hotel & Suites San Diego Otay Mesa by IHG

Holiday Inn Express Hotel & Suites San Diego Otay Mesa by IHG
2.5 star property
31.2 km from Harbor Island
8.2 out of 10, Very Good, (1,760 reviews)
"Clean, friendly staff, great breakfast!!"
United States
Flor
The price is P9,135
P10,391 total
includes taxes & fees
Jun 29 - Jun 30
Holiday Inn Express Hotel & Suites San Diego Otay Mesa by IHG

10. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,171 reviews)
"Clean room, staff was very helpful, parking was easy and accessible!"
United States
Hector
The price is P7,909
P9,091 total
includes taxes & fees
Jun 29 - Jun 30
Wyndham Garden San Diego Near SeaWorld

11. Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
1.1 km from Harbor Island
9.2 out of 10, Wonderful, (1,294 reviews)
"Was a lovely stay and it overlooks the water."
United States
Kara
The price is P11,404
P13,108 total
includes taxes & fees
Jul 1 - Jul 2
Courtyard by Marriott San Diego Airport/Liberty Station

12. Hilton San Diego Bayfront

Hilton San Diego Bayfront
4.0 star property
5 km from Harbor Island
8.6 out of 10, Excellent, (2,177 reviews)
"The rooms were very clean and the view was beautiful!"
United States
Makaya
The price is P11,788
P16,665 total
includes taxes & fees
Jul 2 - Jul 3
Hilton San Diego Bayfront

13. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 8.7 km from Harbor Island
8.0 out of 10, Very Good, (2,198 reviews)
"THE BED WAS SO SOFT ROOM WAS SO CLEAN BREAKFAST WAS GREAT AND THE PRICE WAS KILLER FOR THE LOCATION really a great place to stay"
United States
Tyson
The price is P7,264
P8,350 total
includes taxes & fees
Jul 6 - Jul 7
GreenTree Inn San Diego Mission Bay

14. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 6 km from Harbor Island
8.6 out of 10, Excellent, (1,502 reviews)
"We have stayed here before, good location, clean rooms, great staff."
United States
Lance
The price is P18,331
P24,313 total
includes taxes & fees
Jul 6 - Jul 7
San Diego Mission Bay Resort

15. Embassy Suites by Hilton San Diego Bay Downtown

Embassy Suites by Hilton San Diego Bay Downtown
4.0 star property
3.7 km from Harbor Island
9.0 out of 10, Wonderful, (1,842 reviews)
"We really enjoyed staying here, breakfast was good, staff was great, really clean, we recommend this hotel"
United States
Francesca Elisa
The price is P12,401
P16,602 total
includes taxes & fees
Jul 1 - Jul 2
Embassy Suites by Hilton San Diego Bay Downtown

16. Pacific View Inn

Pacific View Inn
2.0 star property
North Pacific Beach, 9.4 km from Harbor Island
8.2 out of 10, Very Good, (1,003 reviews)
"Loved the location."
United States
NATALIE
The price is P13,551
P15,305 total
includes taxes & fees
Jun 30 - Jul 1
Pacific View Inn

17. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.7 km from Harbor Island
8.8 out of 10, Excellent, (1,471 reviews)
"Hotel is lovely mission style in keeping with the area. The location is very convenient to local attractions."
United States
Toni
The price is P10,318
P11,860 total
includes taxes & fees
Jun 30 - Jul 1
Hilton Garden Inn San Diego Old Town/SeaWorld Area

18. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
2.3 km from Harbor Island
9.0 out of 10, Wonderful, (1,585 reviews)
"Clean room staff very helpful and friendly Enjoyed pool and bar was great"
United States
Beach To
The price is P9,417
P10,824 total
includes taxes & fees
Jul 6 - Jul 7
Best Western Plus Island Palms Hotel & Marina

19. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,081 reviews)
"Staff was so great nice rooms really great stay"
United States
Amelia
The price is P8,829
P10,148 total
includes taxes & fees
Jul 1 - Jul 2
Holiday Inn Express San Diego Airport - Old Town by IHG

20. Best Western Chula Vista/Otay Valley Hotel

Best Western Chula Vista/Otay Valley Hotel
2.5 star property
21.5 km from Harbor Island
8.0 out of 10, Very Good, (1,833 reviews)
"The stay was great, and breakfast was delicious"
United States
Katie
The price is P7,244
P7,982 total
includes taxes & fees
Jul 5 - Jul 6
Best Western Chula Vista/Otay Valley Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Harbor Island

Find the best Harbor Island areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Petco Park and Port of San Diego are a few top attractions in Downtown San Diego. Hop around the city on the metro at Civic Center Station or Civic Center Station and check out the area's fantastic nightlife, fascinating museums, and beautiful waterfront views.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

Top Harbor Island Hotel Reviews

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighborhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best hotel for a stay in Harbor Island?
Based on our traveler data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 4-minute walk from Naval Base Coronado, and it offers a marina and 3 outdoor pools.
How many hotels will I find in Harbor Island?
Book one of Expedia's 6 hotels and other accommodations in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a reservation that's non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to get the best deals in Harbor Island.
What is there to do around this San Diego neighborhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, be sure to visit other sights like Hotel Circle or USS Midway Museum.