Top 10 Hotels Near Shelter Island in San Diego for 2026

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A beach with sand dunes and a person walking.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

P11,475

P13,190 total

includes taxes & fees

Oct 25 - Oct 26

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

2. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

Ana Lopez

P11,347

P13,042 total

includes taxes & fees

Oct 25 - Oct 26

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

3. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Michael

P8,709

P10,011 total

includes taxes & fees

Oct 26 - Oct 27

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A modern aquarium with a celestial-themed backdrop.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

A spacious hotel lobby with a geometric patterned carpet, leather armchairs, a sofa, and a dining table. Large windows offer views of the outside.

4. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

P12,144

P13,959 total

includes taxes & fees

Oct 11 - Oct 12

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

A marina with boats, a hotel with a white facade, and a city skyline in the background.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A coastal view with a clear sky, a marina with boats, and a building with a balcony.

5. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

P11,732

P13,485 total

includes taxes & fees

Oct 22 - Oct 23

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

6. Sea Harbor Hotel

1.4 km from Shelter Island

Chris

P7,959

P8,974 total

includes taxes & fees

Sep 27 - Sep 28

A square pizza on a wooden board with a fire pit in the background.

A hotel with a well-maintained lawn, palm trees, and a pool area.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

7. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Akosua

P9,682

P11,129 total

includes taxes & fees

Oct 25 - Oct 26

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

8. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Nichelle

P7,122

P8,173 total

includes taxes & fees

Oct 25 - Oct 26

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A multi-level interior with a staircase, black railings, and hanging lights.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

9. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

P6,691

P7,544 total

includes taxes & fees

Sep 27 - Sep 28

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A rooftop patio with wicker furniture and palm trees, overlooking a marina.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

10. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Douglas

P6,223

P7,029 total

includes taxes & fees

Sep 29 - Sep 30

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

A modern hotel lobby with a wooden floor, two white armchairs, a reception desk, an ATM, and a staircase.

11. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

P6,198

P7,112 total

includes taxes & fees

Sep 29 - Sep 30

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

A motel with a covered parking area, a blue car parked in the lot, and a building with blue doors.

12. Hotel Point Loma

1.5 km from Shelter Island

Vannika

P5,245

P6,299 total

includes taxes & fees

Sep 27 - Sep 28

A modern reception area with a wooden bench and a green hedge.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

A hotel room with two beds, a blue wall, a beach-themed artwork, and a window with curtains.

13. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

P4,754

P5,360 total

includes taxes & fees

Sep 27 - Sep 28

An outdoor patio area with seating arrangements, a pergola, and a green wall.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

An outdoor patio with tables and chairs, surrounded by tropical plants and artwork.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

14. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

linda

P3,761

P4,248 total

includes taxes & fees

Oct 14 - Oct 15

A living room with a round table, a blue sofa, a patterned armchair, and a potted plant.

A hotel lobby with a reception desk, a chandelier, a buffet area, and a dining table with a vase and a bowl.

An outdoor patio area with lounge chairs, a table, and an umbrella.

A reception area with a round table, vases, and a chandelier. There is a counter with a computer and a refrigerator in the background.

15. Crown City Inn

5.4 km from Shelter Island

Seth

P11,558

P12,714 total

includes taxes & fees

Oct 4 - Oct 5

A spacious dining area with high ceilings, large chandeliers, and a modern interior design.

A bar area with a high ceiling, patterned wall, and seating.

An outdoor dining area with wicker furniture and potted plants.

A multi-story hotel with a prominent 'PENDR' sign, large windows, and a corner entrance.

16. Pendry San Diego

Gaslamp Quarter, 6.6 km from Shelter Island

Diego

P18,430

P24,795 total

includes taxes & fees

Oct 18 - Oct 19

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

An outdoor seating area with sofas and chairs, a wooden staircase, and potted plants.

A modern bedroom with a large bed, a nightstand, a wall-mounted lamp, and a window with curtains.

A modern reception desk with a glass top, a large window offering a view, and a potted plant.

17. City24 Hotel Little Italy Mission Hills

5.9 km from Shelter Island

Victor

P7,242

P10,289 total

includes taxes & fees

Oct 26 - Oct 27

A rooftop pool with lounge chairs and a city skyline in the background.

A modern living room with a large sliding glass door leading to a balcony, a leather sofa, a coffee table with a board game, and a flat-screen TV.

A modern building with a sign reading "kasa little Italy" and a glass entrance.

A modern lobby with seating areas, large windows, and indoor plants.

18. Kasa Little Italy San Diego

5.9 km from Shelter Island

Jeremy

P14,057

P21,499 total

includes taxes & fees

Sep 29 - Sep 30

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

A fountain with multiple water jets in a courtyard with seating and potted plants.

A luxurious room with ornate chandeliers, a grand staircase, and plush seating.

A rooftop terrace with white sofas, a fountain, and potted plants.

19. Westgate Hotel

6.3 km from Shelter Island

Chris

P11,189

P15,146 total

includes taxes & fees

Sep 27 - Sep 28

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

A kitchen area with stainless steel appliances, a coffee machine, and a counter with various kitchen tools.

A kitchen area with stainless steel appliances, a coffee machine, and a variety of kitchen utensils. There is a sign above the counter that reads "gaslamp hostel SAN DIEGO".

A hotel lobby with a blue patterned carpet, a green leather sofa, a red leather sofa, and a wooden railing with plants.

20. Gaslamp Hostel

Gaslamp Quarter, 6.5 km from Shelter Island

Karin

P7,468

P8,495 total

includes taxes & fees

Oct 1 - Oct 2

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Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,693 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,707 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,628 reviews	View
TownePlace Suites by Marriott San Diego Airport/Liberty Station	8.8 Excellent 1,002 reviews	View
Hilton San Diego Airport/Harbor Island	8.8 Excellent 1,213 reviews	View

Top Shelter Island Hotel Reviews

Sheraton San Diego Resort

10/10 Excellent

"Just make sure where your room is. Ours was soon far from the lobby, store and restaurants. Actually too far"

Humphreys Half Moon Inn

10/10 Excellent

"Extremely helpful staff, Best pool I've ever had in a hotel, beautiful property, would definitely come back . Breakfasts were great also"

The Pearl Hotel

10/10 Excellent

"Very nice staff. Clean spaces and cool concept"

Bay Club Hotel & Marina

10/10 Excellent

"Close to everything. 15 minutes to all points of interest. Cant miss hotel."

The Monsaraz San Diego, Tapestry Collection by Hilton

10/10 Excellent

"I had a lovely experience here, no complaints whatsoever. The hotel was very well maintained, there is a full bar, the staff was very helpful, and check-in and out were extremely easy. I highly recommend this hotel and will be returning."

Courtyard by Marriott San Diego Airport/Liberty Station

8/10 Good

"Great location , and customer service was very good , like the pool area"

Best Western Yacht Harbor Hotel

10/10 Excellent

"Stayed here 3 days and 4 nights. Nothing crazy special about the place besides being near the marina and being able to walk around it during sunset. Breakfast was as basic as it could get. Continental, but still pretty good. Took advantage of the pool and hot tub everyday. Overall stay was really good and very conveniently close to everything one would want to go check out."

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"When our flight was cancelled late at night, we were lucky to find this place. We hope to return on purpose sometime soon! The staff was very helpful, with transporting our luggage and walker to and from the room in a building a ways from the lobby. When morning came, we were very pleased with the view and the very nice room. The restaurant looked very nice, although we chose to take-out the breakfast to our room and enjoyed it a lot."

Hotel Aqua Mar

8/10 Good

"My stay was just fine. I was very busy so I had little interaction with staff"

Other attractions near Shelter Island

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.

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Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your travels in San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening at Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, check out the 39 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveler data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 39 hotels and other accommodations within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! The majority of hotel room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and be given a refund within 24 hours of your booking. Put your dates in and click on "Search", then use the filter option "fully refundable" to view the top deals on offer near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego, or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse, and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park, and Lyceum Theatre.

Hotels near Shelter Island

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Our top choices for Shelter Island hotels

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2. Hampton Inn & Suites San Diego Airport Liberty Station

3. Best Western Plus Island Palms Hotel & Marina

4. TownePlace Suites by Marriott San Diego Airport/Liberty Station

5. Hilton San Diego Airport/Harbor Island

6. Sea Harbor Hotel

7. DoubleTree by Hilton San Diego Bayside

8. Best Western Yacht Harbor Hotel

9. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

10. Comfort Inn San Diego Airport At The Harbor

11. Ramada by Wyndham San Diego Airport

12. Hotel Point Loma

13. Hotel Aqua Mar

14. Samesun Ocean Beach - Hostel

15. Crown City Inn

16. Pendry San Diego

17. City24 Hotel Little Italy Mission Hills

18. Kasa Little Italy San Diego

19. Westgate Hotel

20. Gaslamp Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Sheraton San Diego Resort

Humphreys Half Moon Inn

The Pearl Hotel

Bay Club Hotel & Marina

The Monsaraz San Diego, Tapestry Collection by Hilton

Courtyard by Marriott San Diego Airport/Liberty Station

Best Western Yacht Harbor Hotel

Best Western Plus Island Palms Hotel & Marina

Hotel Aqua Mar

Other attractions near Shelter Island

Sunset Cliffs Natural Park

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions