San Juan Island Cottages

Q: Why book your cottage in San Juan Island with Expedia?

Expedia has some excellent cottages in San Juan Island, so get ready for a memorable vacay close to nature. If you have a set budget, select how much you're willing to spend and the star rating of your property. Or, use our filters to search for cottages with a hot tub or free WiFi. We'll help you find the perfect place whatever your plans or style of travel.

Q: How can I find cheap cottages in San Juan Island?

Expedia can help you locate cheap cottages in San Juan Island. To book your dream stay in a few clicks, simply use the filter tool to refine your search by star rating, budget and amenities.

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Our top choices for San Juan Island cottages

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

Oak Harbor

P32,457 total

includes taxes & fees

Jun 1 - Jun 2

@ Marbella Lane - Seas the Bay Sanctuary

Oak Harbor

"It was beautiful! View outstanding. The pictures you have need to be updated. The outside looks nothing like the photos. Overgrown- weeds by the front door area and so much sand. Cliff we can tell has been slowly eroding. Next door the neighbors are loosing their yard. Your yard the fence dangerous. I would not have any children in yard. grassy and things including old tables and wire fencing laying around. Deck falling apart. Lots of sand- we understand but none cleaned up. Bbq horrible even...

Jan-Maree

P31,963 total

includes taxes & fees

May 21 - May 22

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Top San Juan Island Hotel Reviews

The Marina Inn

8/10 Good

"Excellent service and the bed was comfortable. The room and common areas were clean as well. I wish breakfast had some hot options however, the bagels were fresh."

Rosario Village

6/10 Okay

"This is such a gorgeous piece of property. The rooms weren't bad. The bed was extremely cozy and the sheets were so soft. There was plenty of towels and coffee left in the room. The downside to this resort is they have no staff members on site and the main hotel with all the amenities is completely shut down (restaurant, bar, gym...) Expedia shows all these amenities up and running. I was looking forward to a romantic 2-day getaway with my man just at the resort (all inclusive) but we ended up having to find things to do. This property is definitely worth revisiting when it's fully functioning. When visiting go during the day so you can find your way to your room. It's pretty dark and hard to navigate in the dark. There was a couple of us driving around looking for our building. Walking around the main hotel is pretty neat. It needs some TLC but the grounds are gorgeous and pretty maintained. Pack a lunch and sit out on one of their many lawns with all the water views <3"

Snug Harbor Resort

10/10 Excellent

"We loved this place from the moment we pulled up. The grounds are so well kept and the view is beautiful! Our cabin was clean, cute and spacious. I was actually surprised on how supplied the kitchen was, and wished I would’ve planned accordingly to cook a few small meals there. The closest restaurant is about 15 minutes away. This Harbor is so beautiful and fun to watch the resident Harbor seals and all the birds. This was our first trip to the island and it was so fun to find such a little treasure. We will definitely be back someday."

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