What is Mission Bay like?

You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.

What's a favorite hotel to stay in Mission Bay?

Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort .

How many hotels should I expect to find in Mission Bay?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodations to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.

What is there to do around this San Diego neighborhood?

Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Mission Beach and Marine Corps Recruit Depot are some favorite places to visit in the area around Mission Bay. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.

Mission Bay Hotels, San Diego

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

A pool area with a hot tub, lounge chairs, and umbrellas.

1. The Dana on Mission Bay

Mission Bay

Satish

P14,016 total

includes taxes & fees

Sep 28 - Sep 29

A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

2. San Diego Mission Bay Resort

Mission Bay

Evangeline

P21,297 total

includes taxes & fees

Oct 18 - Oct 19

An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

3. Paradise Point Resort & Spa

Mission Bay

Adarsh

P18,336 total

includes taxes & fees

Oct 4 - Oct 5

A resort pool with a lazy river, palm trees, and a view of the ocean.

4. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Linda

P17,689 total

includes taxes & fees

Sep 30 - Oct 1

A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

5. Holiday Inn Express San Diego - SeaWorld Area by IHG

2.3 km from Mission Bay

Christina

P10,901 total

includes taxes & fees

Oct 21 - Oct 22

A modern building with multiple windows, outdoor seating, and a chessboard.

6. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

2.8 km from Mission Bay

Xuan

P11,188 total

includes taxes & fees

Oct 6 - Oct 7

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

7. Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

Ana Lopez

P13,852 total

includes taxes & fees

Sep 28 - Sep 29

A hotel with a central courtyard, palm trees, and a fountain.

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Old Town San Diego, 3.1 km from Mission Bay

Edward Palacios

P9,841 total

includes taxes & fees

Sep 27 - Sep 28

A pool area with lounge chairs and palm trees.

9. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.7 km from Mission Bay

Jason

P9,682 total

includes taxes & fees

Sep 27 - Sep 28

A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

10. Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Nayla

P6,925 total

includes taxes & fees

Sep 29 - Sep 30

A balcony with wicker furniture overlooking a marina and a coastal cityscape.

11. Sheraton San Diego Resort

6 km from Mission Bay

andrew

P15,377 total

includes taxes & fees

Sep 27 - Sep 28

An outdoor seating area with a fire feature, surrounded by palm trees and modern buildings.

12. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

4.2 km from Mission Bay

Demetrius

P10,951 total

includes taxes & fees

Sep 30 - Oct 1

An outdoor patio area with tables and chairs, string lights, and a building with balconies.

13. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 4.1 km from Mission Bay

Timothy

P10,614 total

includes taxes & fees

Sep 27 - Sep 28

14. Comfort Inn Sea World Area

2.9 km from Mission Bay

Rick

P7,797 total

includes taxes & fees

Sep 29 - Sep 30

A modern hotel room with a large bed, bedside tables, a desk, and a wardrobe.

15. Holiday Inn Express San Diego Airport - Old Town by IHG

4.8 km from Mission Bay

Patricia

P10,179 total

includes taxes & fees

Oct 1 - Oct 2

An outdoor lounge area with seating, a fire feature, and a pool in the background.

16. Town and Country San Diego

5.2 km from Mission Bay

Sol

P18,674 total

includes taxes & fees

Sep 25 - Sep 26

A building with a "Bienvenidos" sign, palm trees, and a well-maintained garden.

17. Old Town Inn

3.5 km from Mission Bay

Layne

P10,362 total

includes taxes & fees

Oct 4 - Oct 5

A hotel breakfast area with a long counter displaying various food items, including fruits, pastries, and a coffee station.

18. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

3.6 km from Mission Bay

Esmeralda

P10,218 total

includes taxes & fees

Sep 28 - Sep 29

A living room with a large window, a flat-screen TV, and a patterned rug.

19. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Joseph

P7,543 total

includes taxes & fees

Sep 29 - Sep 30

An outdoor patio with a stone fire pit, outdoor seating, string lights, and a tall, narrow heater.

20. Embassy Suites by Hilton San Diego La Jolla

University City, 11 km from Mission Bay

Virginia

P15,368 total

includes taxes & fees

Sep 27 - Sep 28

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Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Petco Park and Port of San Diego are a few top attractions in Downtown San Diego. Hop around the city on the metro at Civic Center Station or Civic Center Station and check out the area's fantastic nightlife, fascinating museums, and beautiful waterfront views.

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A pier at sunset with people sitting and standing, waves crashing below.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Gaslamp Quarter

The historic heart of San Diego has a fascinating history, and today is a thriving hub for food, retail and entertainment.

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A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

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A beach with palm trees, a hotel, and people enjoying the sand and water.

Ocean Beach

With a secluded sunbathing beach, swimming-only beach, special surf beach, volleyball beach and dog beach, San Diego’s “OB” sure takes beaches seriously.

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Top Mission Bay Hotel Reviews

Omni San Diego Hotel at the Ballpark

10/10 Excellent

"Overall, a very excellent experience with this Hotel. Friendly and professional staff, lots of nice amenities, and what a great location! If I were to list one negative it would be the breakfast buffet. Muffins and bagels were stale. Scrambled eggs remind me of powdered eggs back in the day, bacon was greasy, and the sausage links were overcooked. Not a real good experience with the breakfast buffet. Might wanna consider going to the one of many other breakfast options around the hotel. Other than that, can’t really argue about this place whatsoever. We’ll definitely go back."

The Sofia Hotel

8/10 Good

"Room was modern and the location is good. Bed wasn’t the best and would recommend bringing your own pillows. Parking price has increased from $40 to $46 a night in August 2026 and is in a public parking lot owned by a third party-so no dedicated parking spots for hotel guests. There was also fruit-infused water daily at the front desk when I went. Overall I would stay here again."

Mission Bay Hotels near San Diego

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Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

2. San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

5. Holiday Inn Express San Diego - SeaWorld Area by IHG

6. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

7. Hampton Inn & Suites San Diego Airport Liberty Station

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

9. Best Western Plus Hacienda Hotel Old Town

10. Wyndham Garden San Diego Near SeaWorld

11. Sheraton San Diego Resort

12. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

13. Fairfield Inn & Suites San Diego Old Town

14. Comfort Inn Sea World Area

15. Holiday Inn Express San Diego Airport - Old Town by IHG

16. Town and Country San Diego

17. Old Town Inn

18. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

19. GreenTree Inn San Diego Mission Bay

20. Embassy Suites by Hilton San Diego La Jolla

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Gaslamp Quarter

Mission Beach

Ocean Beach

Top Mission Bay Hotel Reviews

Omni San Diego Hotel at the Ballpark

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