A beach with clear water, palm trees, and people relaxing on the sand.

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Check prices for these dates

In two weeks
Nov 27 - Nov 29
In two months
Jan 8 - Jan 10
In three months
Feb 5 - Feb 7
In four months
Mar 5 - Mar 7

Our top choices for Marathon houseboats

A waterfront property with floating houses connected by a wooden dock.

1. Yacht Haven Marina

Yacht Haven Marina
3.5 star property
Marathon
9.6 out of 10, Exceptional, (385 reviews)
"Loved staying in the aqua lodges, such a relaxing place."
United States
Lauren
The price is P7,400
P17,221 total
includes taxes & fees
Dec 1 - Dec 2
Yacht Haven Marina
A floating houseboat with a covered deck and seating area, docked at a marina.

2. Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
3.5 star property
Marathon
9.6 out of 10, Exceptional, (239 reviews)
"Never stayed in a houseboat before. It was a novel experience!"
United States
Susan
The price is P5,879
P16,230 total
includes taxes & fees
Nov 15 - Nov 16
Aqua Lodge Rentals At Coconut Cay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Marathon Hotel Reviews

Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club

10/10 Excellent
"We like the cleanliness of the room, comfortable beds, quite pool- dinner at the restaurant was amazing"
Joseph 4-night trip
Posted 5 hours ago
Grassy Flats Resort & Beach Club

Find out more about Marathon

Marathon Houseboats information

Number of reviews
624
Accommodation
2 Houseboats
Lowest Price
P16,230
Highest Price
P17,221

Frequently asked questions

Why book your houseboat in Marathon with Expedia?
Expedia makes it a breeze to find houseboats in Marathon — from cute and cozy options to floating palaces fit for a queen (or king!). If you have a certain budget, select how much you're willing to spend and your preferred star rating. We'll help you find the right stay whatever your escape looks like.
How can I find cheap houseboats in Marathon?
If you're on the hunt for terrific deals on houseboats in Marathon, you'll want to implement several filters into your search. You can sort your results by price so that the cheapest options appear first. Then, change your filters to suit your budget. Expedia can help you find your dream floating escape whatever your plans or bank balance.
What is there to do in Marathon near my houseboat?
Marathon has enough activities and experiences to keep you entertained for weeks, beginning with Dolphin Research Center. Florida Keys Aquarium Encounters, Sombrero Beach and Seven Mile Bridge are other wonderful attractions. If you're in town a while, Coco Plum Beach and Curry Hammock State Park will cap off your itinerary nicely.

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