Boutique Hotels in Fisherman's Wharf, San Francisco

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Fisherman's Wharf Boutique Hotels

Tonight
Dec 29 - Dec 30
Tomorrow
Dec 30 - Dec 31
This weekend
Jan 2 - Jan 4
Next weekend
Jan 9 - Jan 11

Our top choices for Fisherman's Wharf boutique hotels

Game room
Hotel Zephyr San Francisco

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf
8.6 out of 10, Excellent, (2341)
"Great location"
United States
Deborah
The price is P7,379
P10,759 total
includes taxes & fees
Jan 30 - Jan 31, 2026
Hotel Zephyr San Francisco
Exterior
Argonaut Hotel

Argonaut Hotel

Argonaut Hotel
4.5 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (1216)
"Absolutely amazing hotel!"
United States
Alicia
The price is P9,454
P13,619 total
includes taxes & fees
Jan 26 - Jan 27, 2026
Argonaut Hotel
Exterior
Fairmont Heritage Place, Ghirardelli Square

Fairmont Heritage Place, Ghirardelli Square

Fairmont Heritage Place, Ghirardelli Square
5.0 star property
Fisherman's Wharf
9.4 out of 10, Exceptional, (386)
"Great staff, clean, excellent location, spacious rooms"
United States
Christopher
The price is P47,000
P55,225 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Fairmont Heritage Place, Ghirardelli Square
Lobby sitting area
The Marker Union Square San Francisco

The Marker Union Square San Francisco

The Marker Union Square San Francisco
4.0 star property
Union Square
9.0 out of 10, Wonderful, (1132)
"The staff was so fabulous, the hotel is gorgeous, and we are already having the best time!"
United States
Faith
The price is P8,202
P9,654 total
includes taxes & fees
Jan 3 - Jan 4, 2026
The Marker Union Square San Francisco
Exterior
Hotel Triton

Hotel Triton

Hotel Triton
4.0 star property
Union Square
8.8 out of 10, Excellent, (1003)
"We had a great stay!"
United States
Jeremy
The price is P6,528
P10,242 total
includes taxes & fees
Jan 25 - Jan 26, 2026
Hotel Triton
Egyptian cotton sheets, premium bedding, pillowtop beds, minibar
Palihotel San Francisco

Palihotel San Francisco

Palihotel San Francisco
3.5 star property
Union Square
8.4 out of 10, Very Good, (632)
"Great vibe here and the rooms and so cute . Excellent bar and bar staff . "
United States
Lana
The price is P6,168
P8,729 total
includes taxes & fees
Jan 3 - Jan 4, 2026
Palihotel San Francisco
Indoor pool
Berkeley City Club

Berkeley City Club

Berkeley City Club
2.5 star property
Telegraph District
8.8 out of 10, Excellent, (697)
"Wonderful, beautiful, old world hotel, right in the heart of bustling Berkeley. "
United States
Peter
Berkeley City Club
Exterior
Hotel Emblem San Francisco

Hotel Emblem San Francisco

Hotel Emblem San Francisco
4.0 star property
Union Square
9.4 out of 10, Exceptional, (1003)
"We enjoyed our stay, close to cable cars shopping dining bars "
United States
HALEY
The price is P6,591
P10,109 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Hotel Emblem San Francisco
Lobby
The Clancy, Autograph Collection by Marriott

The Clancy, Autograph Collection by Marriott

The Clancy, Autograph Collection by Marriott
4.0 star property
Downtown San Francisco
9.2 out of 10, Wonderful, (1001)
"Very professional staff! Central located walking distance to everything!"
United States
Edmundo
The price is P9,674
P13,820 total
includes taxes & fees
Jan 10 - Jan 11, 2026
The Clancy, Autograph Collection by Marriott
View from room
Harbor Court Hotel

Harbor Court Hotel

Harbor Court Hotel
4.0 star property
Downtown San Francisco
9.0 out of 10, Wonderful, (1004)
"Great location, vintage place & walkable everywhere"
United States
ROBERT
The price is P8,166
P12,309 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Harbor Court Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Fisherman's Wharf Hotel Reviews

Hotel Zoe Fisherman's Wharf

Hotel Zoe Fisherman's Wharf

10/10 Excellent
"."
Evangelos 3-night trip
Posted 1 hour ago
Hotel Zoe Fisherman's Wharf

Frequently asked questions

What's the best boutique-style accommodation in Fisherman's Wharf?
Hotel Zephyr San Francisco is a favorite hotel with Expedia travelers looking for a stylish stay, and features a garden and a 24-hour fitness center. Argonaut Hotel and Fairmont Heritage Place, Ghirardelli Square are other boutique-style choices.
What's there to see and do in Fisherman's Wharf?
Visitors speak positively about this destination's beautiful ocean views, major shopping centers, and top museums. Top activities and sights around Fisherman's Wharf include Pier 39, Oracle Park, and San Francisco Bay. You might also like to explore more of the area and take in additional sights like Ghirardelli Square, San Francisco Carousel, and Aquatic Park while you're here.
What's the best way to get to my boutique hotel in Fisherman's Wharf?
You have a few options for getting to and around Fisherman's Wharf. The nearest major airport is Oakland Intl. Airport (OAK), which is located 13 mi (20.9 km) away. You can walk to nearby metro stations including Jones St and Beach St Stop, Jefferson St & Taylor St Stop, and Hyde St & Beach St Stop.