Photo by Sig

Hotels near Boot Key Harbor

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
Dec 26 - Dec 27
Tomorrow
Dec 27 - Dec 28
This weekend
Dec 26 - Dec 28
Next weekend
Jan 2 - Jan 4

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Boot Key Harbor hotels

42-inch Smart TV with digital channels, Netflix, Hulu
Yacht Haven Marina

Yacht Haven Marina

Yacht Haven Marina
3.5 star property
2.2 km from Boot Key Harbor
9.8 out of 10, Exceptional, (244)
"Friendly staff and extremely clean."
United States
Travis
Yacht Haven Marina
Property grounds
Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa
5.0 star property
2.4 km from Boot Key Harbor
9.2 out of 10, Wonderful, (1068)
"Beautiful property, staff are very friendly "
United States
Leann
The price is P18,145
P24,136 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Isla Bella Beach Resort & Spa
View from property
Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway
3.0 star property
1.2 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1001)
"Staff was great, room was super clean AND location was perfect. "
United States
Grace
The price is P7,878
P10,515 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Captain Pips Marina & Hideaway
2 outdoor pools, free cabanas, pool umbrellas
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
3.0 star property
0.8 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1001)
"Food great. Grounds kept prestine"
United States
Donald
The price is P14,511
P18,637 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
Premium bedding, soundproofing, iron/ironing board, free WiFi
Knight's Key Suites

Knight's Key Suites

Knight's Key Suites
3.0 star property
2.7 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1157)
"Very good location.. Clean room."
United States
Leonor
The price is P8,177
P10,464 total
includes taxes & fees
Jan 8 - Jan 9, 2026
Knight's Key Suites
4 outdoor pools, pool umbrellas, sun loungers
Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton

Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton

Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton
4.0 star property
1 km from Boot Key Harbor
8.8 out of 10, Excellent, (1272)
"Room was spotless, staff was so sweet and helpful when we had questions. Would stay here again !"
United States
Theresa
The price is P16,812
P21,124 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Faro Blanco Resort & Yacht Club Marathon, Curio by Hilton
Marina
Skipjack Resort & Marina

Skipjack Resort & Marina

Skipjack Resort & Marina
3.0 star property
1.7 km from Boot Key Harbor
8.6 out of 10, Excellent, (1218)
"Beautiful location clean rooms friendly staff "
United States
Tiffany
Skipjack Resort & Marina
Ocean views, open select days
Banana Bay Resort & Marina

Banana Bay Resort & Marina

Banana Bay Resort & Marina
3.0 star property
1.6 km from Boot Key Harbor
7.8 out of 10, Good, (1000)
"Clean room, smells good, renewed, excellent bed and pillows , quiet, close to ocean and great peaceful views "
United States
Elba
The price is P8,166
P11,499 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Banana Bay Resort & Marina
3 outdoor pools, sun loungers
Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort
4.0 star property
0.7 km from Boot Key Harbor
8.8 out of 10, Excellent, (1003)
"Great resort with lots of fun things to do. Really enjoyed our stay there. Would highly recommend it."
United Kingdom
Jaskaran
The price is P19,007
P25,237 total
includes taxes & fees
Jan 7 - Jan 8, 2026
Tranquility Bay Beachfront Hotel and Resort
BBQ/picnic area
Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
3.5 star property
3.9 km from Boot Key Harbor
9.6 out of 10, Exceptional, (200)
"A unique and interesting place to vacation. Relaxing yet close enough to things to do. I highly recommend the Aqua Loge rentals as a place to stay."
United States
Keith
Aqua Lodge Rentals At Coconut Cay
Aerial view
Seascape Resort & Marina

Seascape Resort & Marina

Seascape Resort & Marina
3.0 star property
4.1 km from Boot Key Harbor
9.4 out of 10, Exceptional, (549)
"Staff was incredible, super clean, great location, amenities were perfect. Thank you so much!!"
United States
Laura E
The price is P11,849
P13,863 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Seascape Resort & Marina
Property amenity
Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys
2.5 star property
8.3 km from Boot Key Harbor
9.2 out of 10, Wonderful, (1054)
"Great staff, clean room, good breakfast "
United States
Kelly
The price is P12,866
P14,474 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Fairfield Inn & Suites by Marriott Marathon Florida Keys
View from room
Kingsail Resort

Kingsail Resort

Kingsail Resort
2.0 star property
3.6 km from Boot Key Harbor
8.6 out of 10, Excellent, (1035)
"Spacious room great staff helpful and location"
United States
William
The price is P8,574
P9,646 total
includes taxes & fees
Jan 11 - Jan 12, 2026
Kingsail Resort
2 outdoor pools, open 8 AM to 9 PM, pool umbrellas, sun loungers
Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort
3.0 star property
8.3 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1000)
"Staff was so sweet! Great place to stay "
United States
Shanna
The price is P17,565
P22,287 total
includes taxes & fees
Jan 10 - Jan 11, 2026
Glunz Ocean Beach Hotel & Resort
Outdoor pool, pool umbrellas, sun loungers
Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys
2.5 star property
8.5 km from Boot Key Harbor
9.0 out of 10, Wonderful, (1001)
"Stay is excellent, highly recommended for families "
United States
Srikanth
The price is P13,217
P14,869 total
includes taxes & fees
Jan 7 - Jan 8, 2026
Hampton Inn Marathon - Florida Keys
Exterior
Coconut Cay Resort & Marina

Coconut Cay Resort & Marina

Coconut Cay Resort & Marina
2.0 star property
3.7 km from Boot Key Harbor
8.4 out of 10, Very Good, (1005)
"Nice clean room and friendly accommodating staff."
United States
Jerri Anne
The price is P12,415
P13,967 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Coconut Cay Resort & Marina
Exterior
Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club
2.5 star property
15.6 km from Boot Key Harbor
9.4 out of 10, Exceptional, (361)
" Beautiful grounds, clean rooms.and nice staff. Great location."
United States
Steven
The price is P20,714
P23,304 total
includes taxes & fees
Jan 7 - Jan 8, 2026
Grassy Flats Resort & Beach Club
Kayaking
Sunshine Key RV Resort & Marina

Sunshine Key RV Resort & Marina

Sunshine Key RV Resort & Marina
2.0 star property
15.6 km from Boot Key Harbor
8.8 out of 10, Excellent, (160)
"Staff was great. Room so clean! Loved the shower. Bed comfy and the property was beautiful! "
United States
brenda
The price is P17,942
P20,185 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Sunshine Key RV Resort & Marina
Exterior
Gulf View Waterfront Resort

Gulf View Waterfront Resort

Gulf View Waterfront Resort
2.5 star property
16.4 km from Boot Key Harbor
8.6 out of 10, Excellent, (529)
"Great property to stay! "
United States
Fernando
Gulf View Waterfront Resort
Front of property
Siesta Motel

Siesta Motel

Siesta Motel
2.0 star property
3.9 km from Boot Key Harbor
7.4 out of 10, Good, (694)
"Yes beautiful thanks."
United States
Donald
The price is P10,707
P12,045 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Siesta Motel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Boot Key Harbor Hotel Reviews

Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

10/10 Excellent
"very very good place. Clean and beautiful!"
Kangxu 1-night trip
Posted 4 days ago
Captain Pips Marina & Hideaway

Hotels near other Boot Key Harbor attractions

This is Zippy. He lives at The Turtle Hospital on Marathon Key in Florida. This facility is doing great things to rehabilitate sea turtles that have been injure by boat strike or interactions with sharks or humans. More details ---> http://turtlestravel.com/hospital-turtles/
Photo by TurtlesTravel
Open Photo by TurtlesTravel

The Turtle Hospital

4.5/5 (467 reviews)
Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's beautiful beaches, or simply savor its seafood restaurants.
See properties
Miami Key Biscayne Golf tropical field

Florida Keys Country Club

4.0/5 (66 reviews)
Play a round of golf in Marathon at Florida Keys Country Club, and enjoy other activities such as running. Stroll along the area's marina, or simply savor its seafood restaurants.
See properties

Frequently asked questions

What's the area like around Boot Key Harbor?
Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 212 hotels and other accommodations you'll find within a mile.
What's the best hotel to stay near Boot Key Harbor?
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys is one of the top choices for your stay based on our traveler data, and this hotel offers 2 outdoor pools and a full-service spa. It's located just a short 0.5 mi (0.8 km) from Boot Key Harbor. Other good choices within a short distance include Banana Bay Resort & Marina and Tranquility Bay Beachfront Hotel and Resort.
How many hotels are there close to Boot Key Harbor?
Expedia has 212 hotels and other accommodations within a mile from Boot Key Harbor.
If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?
Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.
What can I see and do near Boot Key Harbor?
Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.