Three white herons standing among green foliage.

Hotels near Boot Key Harbor

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
Sep 25 - Sep 26
Tomorrow
Sep 26 - Sep 27
This weekend
Sep 25 - Sep 27
Next weekend
Oct 2 - Oct 4

Filter by

Star rating

Guest rating

Our top choices for Boot Key Harbor hotels

A marina with several docked boats and a row of small, white cabins with blue roofs.
A compact bedroom with two beds, a small bathroom, and a view of the outdoors.
A modern kitchen with white cabinetry, a wooden countertop, and a built-in microwave.
A modern kitchen with white cabinets, a microwave, and a dining area with a table and chairs.

1. Yacht Haven Marina

Yacht Haven Marina
2.2 km from Boot Key Harbor
United States
Yamei
P5,646
P15,175 total
includes taxes & fees
Sep 28 - Sep 29
Yacht Haven Marina
An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.
A beach scene with two white chairs, a hammock, and palm trees.
A bar area with wooden chairs, a bar counter, and a variety of bottles and glasses.
A beach with white chairs and kayaks, palm trees, and a clear view of the ocean.

2. Isla Bella Beach Resort & Spa

Isla Bella Beach Resort & Spa
2.4 km from Boot Key Harbor
United States
Andrew
P11,576
P16,732 total
includes taxes & fees
Sep 27 - Sep 28
Isla Bella Beach Resort & Spa
A resort with a pool, lounge chairs, and a view of the ocean.
A hammock tied between palm trees on a rocky beach with a view of the sea.
A modern kitchen with dark countertops, stainless steel appliances, and wooden cabinets.
A deck with tables and chairs, overlooking a calm body of water and palm trees.

3. Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
1.2 km from Boot Key Harbor
United States
Arianna
P9,349
P12,282 total
includes taxes & fees
Sep 27 - Sep 28
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.
An aerial view of a coastal area with a marina, several boats, and a variety of buildings including a large resort with a pool and landscaped areas.
A coastal area with a marina, boats, and a small island with buildings.
A beach with a wooden pier, palm trees, and a clear blue sky.

4. Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway
1.2 km from Boot Key Harbor
United States
michael
P4,855
P10,050 total
includes taxes & fees
Sep 28 - Sep 29
Captain Pips Marina & Hideaway
A modern kitchen with white cabinets and a built-in microwave.
A cozy cabin interior with a leather sofa, wooden dining table, and chairs.

5. Aqua Lodges at 47th Street Gulfside

Aqua Lodges at 47th Street Gulfside
1.9 km from Boot Key Harbor
United States
Lauren
P7,340
P17,081 total
includes taxes & fees
Oct 1 - Oct 2
Aqua Lodges at 47th Street Gulfside
An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.
A bedroom with a bed, bedside tables, a TV, and a sliding glass door to the outside.
A food truck parked in a lush garden with a brick pathway, surrounded by various plants and a white fence.
Two small, single-story buildings with a red and yellow exterior, each with a door and windows, and surrounded by greenery and trees.

6. Tropical Cottages

Tropical Cottages
2.9 km from Boot Key Harbor
United States
Aaron
P4,957
P5,577 total
includes taxes & fees
Sep 29 - Sep 30
Tropical Cottages
A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.
A waterfront property with a swimming pool, palm trees, and a white fence.
A hotel entrance with a covered walkway, palm trees, and a clear blue sky.
A table with breakfast items, a basket, and a view of a parking lot and buildings.

7. Skipjack Resort & Marina

Skipjack Resort & Marina
1.7 km from Boot Key Harbor
Canada
Justin
P8,979
P12,642 total
includes taxes & fees
Sep 27 - Sep 28
Skipjack Resort & Marina
Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.
A marina with boats docked, a dock extending into calm waters, and a small island with palm trees.
A beach with lounge chairs, palm trees, and a string of lights.
An aerial view of a marina with multiple boats docked, surrounded by a sandy beach and palm trees.

8. Banana Bay Resort & Marina

Banana Bay Resort & Marina
1.6 km from Boot Key Harbor
United States
Alex
P6,319
P9,569 total
includes taxes & fees
Sep 29 - Sep 30
Banana Bay Resort & Marina
A swimming pool surrounded by palm trees and lounge chairs.
An aerial view of a resort with a central swimming pool, surrounded by lush greenery and palm trees, with a view of the ocean.
A wooden deck with blue chairs overlooking a beach with palm trees and the ocean.
A beach scene with a wooden deck, palm trees, and a gazebo-like structure.

9. Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort
0.7 km from Boot Key Harbor
United Kingdom
Stuart
P11,495
P16,943 total
includes taxes & fees
Oct 19 - Oct 20
Tranquility Bay Beachfront Hotel and Resort
A beach with palm trees, a sandy path, and beach chairs.
A spacious living area with a gray sectional sofa, wooden beams, and a ceiling fan.
Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.
A floating houseboat with a covered deck and seating area, docked at a marina.

10. Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
3.9 km from Boot Key Harbor
United States
Susan
P5,745
P15,932 total
includes taxes & fees
Sep 27 - Sep 28
Aqua Lodge Rentals At Coconut Cay
A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.
A pool with a view of the ocean and beach chairs.
A beach with palm trees, lounge chairs, and a picnic table.
A view from a balcony overlooking a beach with palm trees, a wooden deck, and a blue picnic table.

11. Seascape Resort & Marina

Seascape Resort & Marina
4.1 km from Boot Key Harbor
United States
Laura
P6,844
P10,851 total
includes taxes & fees
Sep 28 - Sep 29
Seascape Resort & Marina
A wooden deck with a pool and chairs overlooking a beach with palm trees.
A bar area with stools, a counter, and hanging lanterns.
A hotel room with a sofa, a desk, a chair, a TV, and a balcony with curtains.
A beach with a wooden walkway leading to the water, palm trees, and a clear sky.

12. Grassy Flats Resort & Beach Club

Grassy Flats Resort & Beach Club
15.6 km from Boot Key Harbor
United States
Tiffany
P10,937
P15,303 total
includes taxes & fees
Oct 25 - Oct 26
Grassy Flats Resort & Beach Club
A bar area with a long counter, bar stools, and a view of the water.
A waterfront property with a large building, a smaller structure with a thatched roof, and several boats docked.
A Marriott Fairfield Inn & Suites with a modern design, featuring a covered entrance and palm trees.
A balcony with a view of the ocean, a round table, and two chairs.

13. Fairfield Inn & Suites by Marriott Marathon Florida Keys

Fairfield Inn & Suites by Marriott Marathon Florida Keys
8.3 km from Boot Key Harbor
United States
JOSE
P8,378
P9,425 total
includes taxes & fees
Oct 4 - Oct 5
Fairfield Inn & Suites by Marriott Marathon Florida Keys
A wooden dock leading to a row of boats, with a thatched-roof building and palm trees in the background.
A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.
An aerial view of a resort with a swimming pool, lounge area, and palm trees.
A bedroom with a bed, two bedside lamps, a glass table, and a view of a balcony with palm trees.

14. Bonefish Bay Motel

Bonefish Bay Motel
8.1 km from Boot Key Harbor
United States
William
P6,497
P7,821 total
includes taxes & fees
Sep 27 - Sep 28
Bonefish Bay Motel
Three colorful drinks on a table with a thatched roof and outdoor seating.
A modern kitchen with a central island, various appliances, and hanging pendant lights.
A modern living room with a large sectional sofa, a flat-screen TV, and a view of the sea through large windows.
A pool area with lounge chairs, a thatched-roof structure, and a view of the ocean.

15. Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys
8.5 km from Boot Key Harbor
United States
Linda
P8,145
P9,164 total
includes taxes & fees
Oct 4 - Oct 5
Hampton Inn Marathon - Florida Keys
A pool area with lounge chairs and umbrellas, a thatched-roof structure, and a view of the ocean.
A spacious living area with a view of the ocean, a balcony with a pool, and a staircase leading to another level.
A covered outdoor seating area with a view of the ocean, a small table, and two chairs with cushions.
A modern kitchen with a central island, a dining area with a view of the beach, and a living room with a large window overlooking the ocean.

16. Glunz Ocean Beach Hotel & Resort

Glunz Ocean Beach Hotel & Resort
8.3 km from Boot Key Harbor
United States
PAULA LINN
P9,349
P13,215 total
includes taxes & fees
Sep 27 - Sep 28
Glunz Ocean Beach Hotel & Resort
A covered outdoor area with a view of a pool and palm trees.
A hotel room with two beds, white bedding, and a blue accent.
A swimming pool with yellow lounge chairs, palm trees, and a white building in the background.
A covered patio with a round table and chairs, large windows, and a view of a street and greenery.

17. Kingsail Resort

Kingsail Resort
3.6 km from Boot Key Harbor
United States
Jennifer
P4,799
P5,399 total
includes taxes & fees
Oct 5 - Oct 6
Kingsail Resort
A marina with a dock, a boat, and a row of buildings with large windows.
A pool area with lounge chairs and umbrellas, surrounded by palm trees and a white fence.
A wooden deck with a covered area, green Adirondack chairs, and a view of palm trees and a water body.
A two-story beachfront hotel with a wooden deck, palm trees, and a clear sky.

18. Coconut Cay Resort & Marina

Coconut Cay Resort & Marina
3.7 km from Boot Key Harbor
United States
Oscar
P4,966
P6,327 total
includes taxes & fees
Oct 5 - Oct 6
Coconut Cay Resort & Marina
A tropical resort with a swimming pool, palm trees, and a view of the ocean.
An aerial view of a resort with a swimming pool, palm trees, and a beach area.
A beach view with palm trees, a hammock, and a chair by the water.
A kitchen with white cabinets, a microwave, and a dining area with a glass table and white chairs.

19. Gulf View Waterfront Resort

Gulf View Waterfront Resort
16.4 km from Boot Key Harbor
United States
Sonja L
P5,862
P6,595 total
includes taxes & fees
Oct 5 - Oct 6
Gulf View Waterfront Resort
A wooden deck with two chairs and a table, overlooking a beach with palm trees and the ocean.
A beach with lounge chairs and umbrellas, palm trees, and a building with balconies.
A swimming pool with a hot tub, palm trees, and a building with a staircase.
A table with breakfast items and a view of the beach.

20. Rainbow Bend Resort

Rainbow Bend Resort
15 km from Boot Key Harbor
United Kingdom
Adam
P6,469
P10,089 total
includes taxes & fees
Sep 29 - Sep 30
Rainbow Bend Resort
View all properties

Compare popular hotels close to Boot Key Harbor

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A marina with several docked boats and a row of small, white cabins with blue roofs.
Yacht Haven Marina
9.6
Exceptional
362 reviews
View
An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.
Isla Bella Beach Resort & Spa
9.2
Wonderful
1,287 reviews
View
A resort with a pool, lounge chairs, and a view of the ocean.
Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort
9.2
Wonderful
145 reviews
View
A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.
Captain Pips Marina & Hideaway
9.0
Wonderful
1,005 reviews
View
Aqua Lodges at 47th Street Gulfside
8.8
Excellent
58 reviews
View

Top Boot Key Harbor Hotel Reviews

Tranquility Bay Beachfront Hotel and Resort

Tranquility Bay Beachfront Hotel and Resort

10/10 Excellent
"Siempre bueno"
Claudia 3-night trip
Posted 13 hours ago
Tranquility Bay Beachfront Hotel and Resort
Banana Bay Resort & Marina

Banana Bay Resort & Marina

10/10 Excellent
"Staff was friendly and room was awesome."
Alex 1-night trip
Posted 1 day ago
Banana Bay Resort & Marina
Kingsail Resort

Kingsail Resort

10/10 Excellent
"We had a great stay. Our only issue was the chairs provided with the table were very uncomfortable."
Sondra 5-night trip
Posted 1 day ago
Kingsail Resort
Captain Pips Marina & Hideaway

Captain Pips Marina & Hideaway

8/10 Good
"Close to restaurant Pool was nice Docks out back were great"
Melissa 2-night trip
Posted 2 days ago
Captain Pips Marina & Hideaway
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

8/10 Good
"Great location, if you wanted to, you could stay on property and not have to leave. Great food and staff."
RON 4-night trip
Posted 3 days ago
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys
Yacht Haven Marina

Yacht Haven Marina

10/10 Excellent
"Absolute hidden gem. Watched the water burst with life right off our balcony. Manatees, dolphins, tarpon, explosions of baitfish trying to get away. Hard to leave and do anything else."
Michael 2-night trip
Posted 5 days ago
Yacht Haven Marina
Skipjack Resort & Marina

Skipjack Resort & Marina

10/10 Excellent
"Great spot"
Justin 2-night trip
Posted 1 month ago
Skipjack Resort & Marina
Marlin Bay Resort & Marina

Marlin Bay Resort & Marina

10/10 Excellent
"Everything was perfection during our week there. "
Allison 7-night trip
Posted 6 months ago
Marlin Bay Resort & Marina

Other attractions near Boot Key Harbor

A sea turtle swimming underwater.
Photo by Cider Hoff

The Turtle Hospital

9.2/10 (946 reviews)
Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's seaside, or simply savor its seafood restaurants.
See properties
A golf course with a curved path, palm trees, and a clear blue sky.

Florida Keys Country Club

8.2/10 (111 reviews)
Play a round of golf in Marathon at Florida Keys Country Club, and enjoy other activities such as running. Stroll along the area's marina, or simply savor its seafood restaurants.
See properties
A sailboat named 'Soundwave' docked at a calm harbor with clear blue water, surrounded by a sandy beach and lush greenery.

Sombrero Beach

9.0/10 (2,464 reviews)
Play beach games; go swimming, kayaking or snorkeling; and lounge in the sun at one of Marathon’s most visited beaches.
See properties
A sign for Crane Point Hammock with a tree logo and potted plants.

Crane Point Museum and Nature Center

8.6/10 (54 reviews)
You can spend an afternoon exploring the galleries in Crane Point Museum and Nature Center in Marathon. Discover the area's beautiful sunsets, or seek out its jogging trails.
See properties
A tall red lighthouse on a pier in the ocean.

Vaca Key

8.8/10 (411 reviews)
Commune with nature and explore the great outdoors at Vaca Key during your travels in Marathon. Stroll along the seaside or discover the area's beautiful sunsets.
See properties
A bridge over turquoise water with a clear sky.

Seven Mile Bridge

9.4/10 (3,266 reviews)
Walk, jog, cycle or drive across one of the longest bridges in North America to take in the scenic ocean views it provides.
See properties

Shady Palm Art Gallery

You can spend time browsing the exhibits at Shady Palm Art Gallery during your trip to Marathon. Stroll along the area's seaside, or simply savor its seafood restaurants.
See properties

Marathon Air Museum

You can spend an afternoon studying the exhibits at Marathon Air Museum during your travels in Marathon.
See properties

Frequently asked questions

What's the area like around Boot Key Harbor?
Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 201 hotels and other accommodations you'll find within a mile.
What's the best hotel to stay near Boot Key Harbor?
Tranquility Bay Beachfront Hotel and Resort is one of the top choices for your stay based on our traveler data, and this hotel offers 3 outdoor pools and a private beach. It's located just a short 0.4 mi (0.7 km) from Boot Key Harbor. Other good choices within a short distance include Faro Blanco Resort Marathon Florida Keys, Curio by Hilton and Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys.
How many hotels are there close to Boot Key Harbor?
Expedia has 201 hotels and other accommodations within a mile from Boot Key Harbor.
If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?
Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.
What can I see and do near Boot Key Harbor?
Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.